Papers

Basic information

Name OZAWA Hitoshi

Title

Suitable reference gene selection for gene expression studies in knee osteoarthritis synovium using quantitative PCR analysis.

Author

Hiroshi Watanabe,Hirotaka Ishii,Kenji Takahashi,Shinro Takai,Hitoshi Ozawa

Sole or Joint Author

 

Journal

Connective tissue research

Publisher

TAYLOR & FRANCIS INC

All Volumes

 

All Pages

 

Volume

59

Number

4

Starting Page

356

Ending Page

368

Publication Date

2018-07

Referee Paper

Refereed

Invited Paper

Not invited

Language

English

MISC Class

 

Publishing Type

Research paper (scientific journal)

ISSN

 

ID:DOI

10.1080/03008207.2017.1391234

ID:NAID

 

ID:PMID

 

URL

Description

Osteoarthritis (OA) is the leading cause of musculoskeletal disability in the elderly. Insights into the biological features of OA are obtained by characterization of the molecular features by gene expression profiling using reverse transcription-quantitative PCR (RT-qPCR). However, it has recently become evident that the use of suitable reference genes is required for appropriate normalization of this technique. Here total RNA was isolated from the synovium of 18 men and 20 women who underwent total knee arthroplasty for knee OA (KOA). We validated the expression stability of 7 candidate housekeeping genes (ACTB, B2M, GAPDH, HPRT1, RPL13A, SDHA, and YWHAZ) in the synovium of KOA with 3 commonly used algorithms (geNorm, NormFinder, and BestKeeper). Additionally, we evaluated expression profiles of the steroid hormone receptor (AR, ESR1, ESR2, GR, MR, and PR) and proinflammatory cytokines (IL1B and IL6) genes in the synovium and their correlations with the risk factors of KOA, using the most and least stable housekeeping genes for comparison. Results showed that HPRT1 was the most stable gene, whereas B2M was the least stable. RT-qPCR analysis revealed sexually dimorphic expression of AR, IL1B, and IL6; intercorrelations between steroid hormone receptor expression levels and female-specific correlations of IL1B expression with ESR1 and PR expression, IL6 expression with ESR1 and GR expression, and body mass index with AR and PR expression; and the choice of the least stable reference gene altered several correlations and statistical significances. In conclusion, HPRT1 was identified as the suitable reference gene for normalization in the OA synovium.

ID:JGlobalID

 

arXiv ID

 

Put Code of ORCID

 

DBLP ID

 

WekoID of OpenDepo